Literature and Links to sites mentioned in Lectures 1 and 2

Literature

• ESTs - the original paper:
  Complementary DNA sequencing: expressed sequence tags and human genome project.
  Adams MD et al
  Science 252(5013):1651-6 21 Jun 1991

• 'internal' EST's:
  Shotgun sequencing of the human transcriptome with ORF expressed sequence tags.
  Dias Neto E et al
  PNAS 97(7):3491-6 28 Mar 2000

• 5' oligo cap method:
  Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides
  Kazuo Maruyama and Sumio Sugano
  Gene 138(1-2):171-174, 28 Jan 1994

• GenBank:
  GenBank
  BensonDA, Karsch-Mizrachi I, Lipman DJ, Ostell J, and Sayers EW.
  Nucleic Acids Res. 37(Database issue): D41-48. Epub 2008 Oct 22.

• UniProt:
  Ongoing and future developments at the Universal Protein Resource.
  UniProt Consortium
  Nucleic Acids Res. 39(Database issue):D214-9. Epub 2010 Nov 4

• RefSeq:
  NCBI Reference Sequences:current status, policy and new initiatives.
  Pruitt KD, Tatusova T, Klimke W, Maglott DR
  Nucleic Acids Res 37(Database issue):D32-36 Epub 2008 Oct 16

• Entrez Gene:
  Entrez Gene: gene-centered information at NCBI.
  Maglott D, Ostell J, Pruitt KD, Tatusova T.
  Nucleic Acids Res 39(Database issue):D52-7. Epub 2010 Nov 28

Links

• INSDC: http://www.insdc.org/
• NCBI: http://www.ncbi.nlm.nih.gov
• GenBank: http://www.ncbi.nlm.nih.gov/genbank/
• EMBL: http://www.ebi.ac.uk/ena
• DDBJ: http://www.ddbj.nig.ac.jp/
• RefSeq: http://www.ncbi.nlm.nih.gov/RefSeq/
• NEDO: http://www.kazusa.or.jp/NEDO/
• HUGE (Kasuza): http://www.kazusa.or.jp/huge/
• Full Length cDNA collections: http://www.ncbi.nlm.nih.gov/genome/flcdna/
• Mammalian Gene Collection: http://mgc.nci.nih.gov
• Entrez Gene: http://www.ncbi.nlm.nih.gov/gene
• UniProt: http://www.uniprot.org/
• HUGO Nomenclature: http://www.genenames.org/