Literature and Links to sites mentioned in Lecture 5
Literature
- Global pairwise alignment
A general method applicable to the search for similarities in the amino acid sequence of two proteins.
Needleman SB, Wunsch CD
J Mol Biol 1970 Mar;48(3):443-53
- Align
Myers EW and Miller W
CABIOS (now Bioinformatics) 1989
- Local pairwise alignment
Identification of common molecular subsequences
Smith TF, Waterman MS
J Mol Biol 1981 Mar 25;147(1):195-7
- LAlign
Huang X, Miller W
Adv Appl Math 1991 12:373-381
- PRDF
Improved tools for biological sequence comparison
Pearson WR, Lipman DJ
PNAS 1988 85:2444-2448
- PRSS
Effective protein sequence comparison
Pearson WR
Meth Enzymol 1996 266:227-258
Links