Literature and Links to sites mentioned in Lecture 13

Literature

Links

Various Expression Databases:

• https://www.ncbi.nlm.nih.gov/geo/ NCBI GEO a repository for microarray and sequencing data
• https://www.ebi.ac.uk/gxa/home EBI GXA: Gene Expression Atlas
• https://www.ebi.ac.uk/gxa/sc/home EBI GXA for single cell data
• http://www.informatics.jax.org/expression.shtml Mouse Genome Informatics Expression Data
• https://gtexportal.org/home/ GTEx portal
• https://www.proteinatlas.org/ Human Protein Atlas
• https://pax-db.org/ PaxDb: Protein Abundance Database
• http://netbio.bgu.ac.il/tissuenet/ TissueNet - Human Tissue protein-protein interactions
• http://biogps.org/ BioGPS
• https://coxpresdb.jp/ COXPRESdb co-expression information for various species
• planex.plantbioinformatics.org/ Planex - plant co-expression database
• http://portal.brain-map.org/ Allen Brain Map
• https://research.cchmc.org/pbge/lunggens/mainportal.html LGEA Web Portal: Lung Gene Expression Analysis
• https://www.humancellatlas.org/ Human Cell Atlas
• http://jinglebells.bgu.ac.il/ RNA-Seq database (single cell)
• http://single-cell.clst.riken.jp/ SCPortalen: Single-cell centric database
• https://panglaodb.se/ PanglaoDB single cell database, including suggested marker genes
• https://www.proteomicsdb.org/ ProteomicsDB - human proteomics data
• http://www.peptideatlas.org/ Peptide Altas
• https://www.subcellbarcode.org/ SUBCELL Barcode - proteome subcellular localization
• https://alganaut.uts.edu.au/Clusterview/ Alganaut - transcriptomics for Algae
• http://bar.utoronto.ca/efp/cgi-bin/efpWeb.cgi Arabidopsis eFP Browser